Package: FounderForge 0.1.0

FounderForge: Prepare Marker Data as AlphaSimR Founder Populations

A point-and-click Shiny application that helps non-programmers prepare their own marker data (VCF, HapMap, numeric genotype matrices or PLINK) as a founder population for AlphaSimR simulations. It guides users through uploading data, quality-control review, filtering (MAF, missingness, monomorphic markers), optional trait definition and export of the objects required by AlphaSimR::newMapPop(), with progress feedback, helpful errors, optional before/after PCA validation and a full text log of the run.

Authors:Ebenezer Ogoe [aut, cre]

FounderForge_0.1.0.tar.gz
FounderForge_0.1.0.zip(r-4.7-any)FounderForge_0.1.0.zip(r-4.6-any)FounderForge_0.1.0.zip(r-4.5-any)
FounderForge_0.1.0.tgz(r-4.6-any)FounderForge_0.1.0.tgz(r-4.5-any)
FounderForge_0.1.0.tar.gz(r-4.7-any)FounderForge_0.1.0.tar.gz(r-4.6-any)
FounderForge_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FounderForge/json (API)

# Install 'FounderForge' in R:
install.packages('FounderForge', repos = c('https://ebenogoe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ebenogoe/founderforge/issues

Pkgdown/docs site:https://ebenogoe.github.io

On CRAN:

Conda:

alphasimrfounder-populationhapmapplant-breedingshiny-appsimulationvcf

1.70 score 1 exports 87 dependencies

Last updated from:03806def38. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK193
source / vignettesOK246
linux-releaseOK180
macos-releaseOK131
macos-oldrelOK169
windows-develOK110
windows-releaseOK101
windows-oldrelOK98
wasm-releaseOK137

Exports:run_app

Dependencies:AlphaSimRapeattemptbase64encBHbsiconsbslibcachemcliclustercodetoolscommonmarkconfigcpp11crosstalkdata.tabledigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegolemgtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisememusemgcvmimenlmeotelpermutepillarpinfsc50pkgconfigpromisesR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackrlangrmarkdownS7sassscalesshinyshinybusyshinyFilesshinyWidgetssourcetoolsstringistringrtibbletidyselecttinytexutf8vcfRvctrsveganviridisLitewithrxfunxtableyaml