Package: FounderForge 0.1.0
FounderForge: Prepare Marker Data as AlphaSimR Founder Populations
A point-and-click Shiny application that helps non-programmers prepare their own marker data (VCF, HapMap, numeric genotype matrices or PLINK) as a founder population for AlphaSimR simulations. It guides users through uploading data, quality-control review, filtering (MAF, missingness, monomorphic markers), optional trait definition and export of the objects required by AlphaSimR::newMapPop(), with progress feedback, helpful errors, optional before/after PCA validation and a full text log of the run.
Authors:
FounderForge_0.1.0.tar.gz
FounderForge_0.1.0.zip(r-4.7)FounderForge_0.1.0.zip(r-4.6)FounderForge_0.1.0.zip(r-4.5)
FounderForge_0.1.0.tgz(r-4.6-any)FounderForge_0.1.0.tgz(r-4.5-any)
FounderForge_0.1.0.tar.gz(r-4.7-any)FounderForge_0.1.0.tar.gz(r-4.6-any)
FounderForge_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FounderForge/json (API)
NEWS
| # Install 'FounderForge' in R: |
| install.packages('FounderForge', repos = c('https://ebenogoe.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ebenogoe/founderforge/issues
Pkgdown/docs site:https://ebenogoe.github.io
alphasimrfounder-populationhapmapplant-breedingshiny-appsimulationvcf
Last updated from:03806def38. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 329 | ||
| source / vignettes | OK | 380 | ||
| linux-release-x86_64 | OK | 221 | ||
| macos-release-arm64 | OK | 162 | ||
| macos-oldrel-arm64 | OK | 183 | ||
| windows-devel | OK | 131 | ||
| windows-release | OK | 107 | ||
| windows-oldrel | OK | 106 | ||
| wasm-release | OK | 140 |
Exports:run_app
Dependencies:AlphaSimRapeattemptbase64encBHbsiconsbslibcachemcliclustercommonmarkconfigcpp11crosstalkdata.tabledigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisememusemgcvmimenlmeotelpermutepillarpinfsc50pkgconfigpromisesR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackrlangrmarkdownrprojrootS7sassscalesshinyshinybusyshinyFilesshinyWidgetssourcetoolsstringistringrtibbletidyselecttinytexutf8vcfRvctrsveganviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Run the Shiny Application | run_app |
