Package: linkmapper 0.1.0
linkmapper: Linkmapper: A GUI for Linkage Mapping and QTL Visualisation
A Shiny web application that wraps the 'onemap' R package to let users perform linkage mapping and QTL visualisation on biparental mapping populations (F2 intercross and backcross) without writing any code. Provides a graphical workflow for data upload, segregation distortion testing, two-point linkage analysis, marker grouping, linkage group ordering, and final linkage map generation and download. Designed for students and researchers in molecular genetics and plant breeding who require a reproducible, open-source alternative to commercial linkage mapping software.
Authors:
linkmapper_0.1.0.tar.gz
linkmapper_0.1.0.zip(r-4.7)linkmapper_0.1.0.zip(r-4.6)linkmapper_0.1.0.zip(r-4.5)
linkmapper_0.1.0.tgz(r-4.6-any)linkmapper_0.1.0.tgz(r-4.5-any)
linkmapper_0.1.0.tar.gz(r-4.7-any)linkmapper_0.1.0.tar.gz(r-4.6-any)
linkmapper_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
linkmapper/json (API)
| # Install 'linkmapper' in R: |
| install.packages('linkmapper', repos = c('https://ebenogoe.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ebenogoe/linkmapper/issues
gene-maplinkage-mappingopen-sourceqtl-mappingr-shiny
Last updated from:5eae583906 (on main). Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 173 | ||
| source / vignettes | OK | 255 | ||
| linux-release-x86_64 | OK | 171 | ||
| macos-release-arm64 | OK | 94 | ||
| macos-oldrel-arm64 | OK | 78 | ||
| windows-devel | OK | 116 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 91 | ||
| wasm-release | OK | 147 |
Exports:group_markersrun_linkmappervalidate_lm_file
Dependencies:abindapeaskpassbackportsbase64encbitbit64bootbroombslibcachemcarcarDatacheckmateclassclicliprclustercodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tabledendextendDerivdigestdoBydoParalleldplyre1071ellipseevaluatefarverfastmapfontawesomeforcatsforeachforecastforeignFormulafracdifffsgdatagenericsggplot2ggpubrggrepelggsciggsignifglmnetgluegridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrisobanditeratorsjomojquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisememusemgcvmicemicrobenchmarkmimeminqamitmlmodelrnlmenloptrnnetnnlsnumDerivonemapopensslordinalotelpanpbkrtestpermutepillarpinfsc50pkgconfigplotlyplotrixplyrpolynomprettyunitsprincurveprogresspromisesproxypurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasreshape2rlangrmarkdownrpartrstatixrstudioapiS7sassscalesshapeshinysmacofsourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytextzdbucminfurcautf8vcfRvctrsveganviridisviridisLitevroomweightswithrwordcloudxfunxtableyamlzoo
Introduction to Linkmapper
Rendered fromlinkmapper-intro.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-06-22
Started: 2026-06-22
Linkmapper Tutorial: Linkage Mapping with the F2 Demo Dataset
Rendered fromlinkmapper-tutorial.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-06-22
Started: 2026-06-22
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Group markers into linkage groups | group_markers |
| Run the Linkmapper Shiny application | run_linkmapper |
| Validate and read a MAPMAKER linkage mapping input file | validate_lm_file |
