Package: linkmapper
Title: Point-and-Click Linkage Mapping and QTL Analysis
Version: 0.2.0
Authors@R: c(
    person("Ebenezer", "Ogoe", , "ebenezerogoe@gmail.com", role = c("aut", "cre", "cph"),
           comment = "Co-creator; wrote the 2026 package"),
    person("Michael", "Obeng", role = c("aut", "cph"),
           comment = "Co-creator of Linkmapper (2022)"),
    person("Stephen", "Amoako", role = c("aut", "cph"),
           comment = "Co-creator of Linkmapper (2022)")
  )
Description: A 'shiny' application and a set of plain R functions for
        building genetic linkage maps and locating quantitative trait
        loci in F2 intercross, backcross and recombinant inbred line
        populations. It wraps 'onemap' (Margarido et al. 2007
        <doi:10.1111/j.2007.0018-0661.02000.x>) for segregation tests,
        two-point analysis, grouping, ordering and map estimation, and
        'qtl' (Broman et al. 2003 <doi:10.1093/bioinformatics/btg112>)
        for interval mapping and composite interval mapping with
        permutation thresholds. Results can be exported as figures,
        tables, a self-contained HTML report and an R script that
        reproduces the analysis.
License: MIT + file LICENSE
URL: https://github.com/ebenogoe/linkmapper,
        https://ebenogoe.github.io/linkmapper/
BugReports: https://github.com/ebenogoe/linkmapper/issues
Depends: R (>= 4.1.0)
Imports: bsicons, bslib (>= 0.8.0), cicerone, config, ggiraph, ggplot2
        (>= 3.5.0), golem, grDevices, htmltools, jsonlite, onemap, qtl,
        reactable, shiny (>= 1.8.1), stats, svglite, tools, utils,
        writexl
Suggests: chromote, pkgload, shinytest2, testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev
        libpng-dev libuv1-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://ebenogoe.r-universe.dev
Date/Publication: 2026-10-14 19:33:53 UTC
RemoteUrl: https://github.com/ebenogoe/linkmapper
RemoteRef: main
RemoteSha: a75c2a9a05f7323fad8ba3fbeff2074c72554092
NeedsCompilation: no
Packaged: 2026-10-14 22:33:31 UTC; root
Author: Ebenezer Ogoe [aut, cre, cph] (Co-creator; wrote the 2026 package),
  Michael Obeng [aut, cph] (Co-creator of Linkmapper (2022)),
  Stephen Amoako [aut, cph] (Co-creator of Linkmapper (2022))
Maintainer: Ebenezer Ogoe <ebenezerogoe@gmail.com>